STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gumCExopolysaccharide biosynthesis protein. (760 aa)    
Predicted Functional Partners:
gumB
Polysaccharide export protein.
 
 
 0.993
wcaJ
Colanic biosynthesis UDP-glucose lipid carrier transferase.
 
  
 0.974
wza
Putative polysaccharide export protein.
 
 
 0.953
capC
Capsular polysaccharide biosynthesis protein.
  
 0.939
ebA1174
Conserved hypothetical protein.
  
 
 0.927
sthA
Putative glycosyltransferase.
 
  
 0.889
ebA5903
Probable sugar transferase, WBGY.
 
  
 0.887
ebA5975
Probable binding-protein-dependent transport system protein.
 
  
 0.869
fdhB
Formate dehydrogenase, NAD(P) reducing, beta subunit.
    
 0.825
ebA6795
Hypothetical protein containing domain similar to chaperone protein type DnaJ.
       0.800
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.