Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
capCCapsular polysaccharide biosynthesis protein. (266 aa)    
Predicted Functional Partners:
gumC
Exopolysaccharide biosynthesis protein.
 
  
 0.945
gumB
Polysaccharide export protein.
 
   
 0.801
ebA4250
Probable exopolysaccharide biosynthesis protein.
  
 0.777
ebA5975
Probable binding-protein-dependent transport system protein.
 
    0.773
ebA6787
Hypothetical protein.
 
     0.742
wcaJ
Colanic biosynthesis UDP-glucose lipid carrier transferase.
 
  
 0.651
ebA6795
Hypothetical protein containing domain similar to chaperone protein type DnaJ.
       0.479
ebA5903
Probable sugar transferase, WBGY.
 
  
 0.475
ebA6805
Conserved hypothetical protein.
  
    0.437
ebA6804
Conserved hypothetical protein.
       0.430
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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