STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sirBPredicted Invasion gene expression up-regulator, SirB. (131 aa)    
Predicted Functional Partners:
ebA5142
Conserved hypothetical protein, putativ NnrS family.
 
     0.836
ebA5146
Conserved hypothetical protein.
 
     0.820
dnr
Transcriptional regulator, Dnr/Nnr type.
       0.559
ebA2630
Probable dioxygenase related to 2-nitropropane dioxygenase.
 
     0.484
hemK
Protein-glutamine N-methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
  
    0.468
ebA5030
Conserved hypothetical protein.
  
    0.468
ebA3532
Conserved hypothetical protein.
 
     0.424
nirE
Uroporphyrin-III C-methyltransferase.
  
     0.407
Your Current Organism:
Aromatoleum aromaticum
NCBI taxonomy Id: 76114
Other names: A. aromaticum EbN1, Aromatoleum aromaticum EbN1, Aromatoleum aromaticum str. EbN1, Aromatoleum aromaticum strain EbN1, Azoarcus sp. EbN1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.