STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46461.1Chromosomal replication initiator protein dnaA. (475 aa)    
Predicted Functional Partners:
AEI47860.1
DNA polymerase III, beta subunit.
 
 0.978
AEI51604.1
Replicative DNA helicase.
 
 
 0.909
AEI51740.1
DNA replication and repair protein recF.
  
 0.813
AEI46462.1
Hypothetical protein.
     
 0.720
AEI50070.1
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
 
  
 0.717
AEI51261.1
DNA gyrase, B subunit.
  
 0.674
AEI47739.1
Cell division protein FtsK/SpoIIIE.
  
  
 0.668
AEI51896.1
parB-like partition protein.
 
  
 0.643
AEI51322.1
DNA primase.
 
  
 0.633
AEI49925.1
Recombination protein recR.
 
   
 0.613
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.