STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI46462.1Hypothetical protein. (322 aa)    
Predicted Functional Partners:
AEI46461.1
Chromosomal replication initiator protein dnaA.
     
 0.747
AEI48283.1
Hypothetical protein.
  
     0.584
AEI48634.1
Hypothetical protein.
  
     0.576
AEI50905.1
Protein of unknown function DUF88.
  
     0.540
AEI50463.1
Alanine racemase.
 
   
 0.528
AEI48266.1
FG-GAP repeat protein.
  
     0.514
AEI48665.1
Hypothetical protein.
  
     0.510
AEI50436.1
Hypothetical protein.
  
     0.505
AEI50491.1
Hypothetical protein.
  
     0.500
AEI47046.1
Hypothetical protein.
  
     0.493
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.