STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI46470.1Xenobiotic-transporting ATPase. (607 aa)    
Predicted Functional Partners:
AEI49309.1
Sulfate-transporting ATPase.
     
0.853
AEI47006.1
Diaminobutyrate decarboxylase.
 
   
 0.646
Runsl_3923
tRNA-Gln.
  
 0.644
AEI51506.1
Protein serine/threonine phosphatase.
   
 
 0.639
AEI46469.1
TonB-dependent receptor.
  
    0.584
AEI49603.1
Hypothetical protein.
    
  0.528
AEI49893.1
ATPase, P-type (transporting), HAD superfamily, subfamily IC.
   
 0.496
AEI46471.1
Hypothetical protein.
       0.487
AEI51261.1
DNA gyrase, B subunit.
  
 
 0.483
AEI49308.1
Protein of unknown function DUF140.
  
 0.477
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.