STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46496.1Alpha-1,2-mannosidase. (847 aa)    
Predicted Functional Partners:
AEI48682.1
Uncharacterized conserved protein UCP028846.
   
 0.859
AEI46495.1
PfkB domain protein.
       0.773
AEI48246.1
Beta-N-acetylhexosaminidase.
 
   
 0.660
AEI50237.1
Beta-N-acetylhexosaminidase.
 
   
 0.643
AEI49165.1
Mannosylglycoprotein endo-beta-mannosidase.
 
   
 0.593
AEI46494.1
L-aminoadipate-semialdehyde dehydrogenase.
       0.563
AEI46497.1
YdjC family protein.
       0.481
AEI46547.1
Alpha-L-fucosidase.
 
   
 0.459
AEI49018.1
Alpha-L-fucosidase.
 
   
 0.459
AEI49020.1
Alpha-L-fucosidase.
 
   
 0.452
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.