STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI46504.1Hypothetical protein. (396 aa)    
Predicted Functional Partners:
AEI49631.1
Tetratricopeptide domain protein.
  
    0.681
AEI47031.1
Hypothetical protein.
  
     0.655
AEI49877.1
Hypothetical protein.
  
     0.637
AEI51928.1
UvrD/REP helicase.
 
     0.623
AEI50849.1
Lipoprotein.
  
     0.593
AEI46503.1
WD40-like beta Propeller containing protein.
       0.578
AEI50900.1
Tetratricopeptide TPR_1 repeat-containing protein.
  
   0.569
AEI51922.1
Hypothetical protein.
  
     0.553
AEI50589.1
Hypothetical protein.
  
     0.551
AEI47514.1
Hypothetical protein.
  
     0.550
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.