STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46509.1PHP domain protein. (590 aa)    
Predicted Functional Partners:
AEI47860.1
DNA polymerase III, beta subunit.
  
 
 0.799
AEI48486.1
DNA polymerase I.
  
 0.791
AEI49443.1
Transketolase domain-containing protein.
   
   0.770
AEI51869.1
Imidazoleglycerol-phosphate dehydratase.
  
 0.770
AEI47271.1
Histidine biosynthesis bifunctional protein hisIE.
  
  
 0.694
AEI47250.1
Exodeoxyribonuclease III Xth.
   
 0.638
AEI47242.1
3'-5' exonuclease, PolB.
  
 0.582
AEI50096.1
Histidinol-phosphate phosphatase family protein.
    
 0.573
AEI48457.1
MutS2 protein.
  
  
 0.546
AEI51311.1
Smr protein/MutS2.
  
  
 0.546
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.