STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46519.1Methionyl-tRNA formyltransferase. (298 aa)    
Predicted Functional Partners:
AEI46692.1
Methionyl-tRNA synthetase.
  
 
 0.937
AEI48745.1
Phosphoribosylglycinamide formyltransferase.
    
0.929
AEI47900.1
Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase.
    
 0.924
AEI47243.1
Peptide deformylase.
 
 0.923
AEI50970.1
Permease YjgP/YjgQ family protein.
 
    0.908
AEI49569.1
UDP-glucuronate decarboxylase.
    
 0.904
AEI46890.1
Betaine-aldehyde dehydrogenase.
 
    
 0.900
AEI48128.1
Formyltetrahydrofolate deformylase.
     
  0.900
AEI49006.1
Aldehyde Dehydrogenase.
 
    
 0.900
AEI48826.1
Aldehyde Dehydrogenase.
 
    
 0.899
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.