STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46522.1GTP-binding protein YchF. (365 aa)    
Predicted Functional Partners:
AEI46687.1
Peptidyl-tRNA hydrolase.
 
  
 0.894
AEI48172.1
Peptide chain release factor 1.
 
 
 0.888
AEI49051.1
Threonine aldolase.
      0.866
AEI48115.1
Ribosomal protein L14.
  
 
 0.856
AEI48122.1
Ribosomal protein L2.
  
 
 0.850
AEI48240.1
Ribosomal protein L11.
  
 
 0.835
AEI51675.1
50S ribosomal protein L9.
  
 
 0.833
AEI48114.1
Ribosomal protein L24.
   
 
 0.828
AEI51704.1
50S ribosomal protein L19.
  
 
 0.826
AEI48480.1
Phenylalanyl-tRNA synthetase beta chain.
  
  
 0.806
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.