STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46528.1Alpha amylase catalytic region. (606 aa)    
Predicted Functional Partners:
AEI50532.1
Trehalose synthase-fused maltokinase-like protein.
 
 
 0.686
AEI46529.1
Glycosyl transferase group 1.
   
 
 0.574
AEI48082.1
Isoamylase N-terminal domain-containing protein.
 
  
 0.499
AEI46593.1
Starch synthase.
  
  
 0.444
AEI51465.1
Cyclomaltodextrinase.
 
   
 0.443
Runsl_3241
tRNA-Met.
 
  
 0.427
AEI47802.1
1,4-alpha-glucan branching enzyme.
 
  
 0.425
AEI49091.1
Major facilitator superfamily MFS_1.
 
  
 0.411
AEI50717.1
Glutamate synthase (ferredoxin).
     
 0.409
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.