STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI46532.1D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein. (634 aa)    
Predicted Functional Partners:
AEI48530.1
Phosphoserine transaminase.
 
 0.996
AEI47271.1
Histidine biosynthesis bifunctional protein hisIE.
  
  
 0.968
AEI51912.1
Aminotransferase class V.
 
 0.965
AEI50867.1
2,3-bisphosphoglycerate-independent phosphoglycerate mutase.
  
 
 0.938
AEI51393.1
Phosphoglycerate dehydrogenase.
 
0.922
AEI46858.1
Aspartate kinase.
  
 
 0.867
AEI51869.1
Imidazoleglycerol-phosphate dehydratase.
  
  
 0.844
AEI48713.1
Imidazole glycerol phosphate synthase subunit hisF.
  
  
 0.830
AEI50303.1
Histidine biosynthesis protein.
  
  
 0.830
AEI46922.1
Histidinol dehydrogenase.
  
  
 0.796
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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