STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46533.1Glycoside hydrolase family 9. (605 aa)    
Predicted Functional Partners:
AEI46706.1
Polysaccharide deacetylase.
   
 0.978
AEI48971.1
Glycoside hydrolase family 5.
 
 0.937
AEI49779.1
Carbohydrate binding family 6.
  
 0.928
AEI50006.1
Glycoside hydrolase family 5.
  
 0.928
AEI46931.1
Xylan 1,4-beta-xylosidase.
  
  
 0.927
AEI48689.1
Glycoside hydrolase family 18.
 
   
 0.565
AEI46534.1
Nuclease SbcCD, D subunit.
       0.526
AEI46535.1
SMC domain protein.
       0.526
AEI46532.1
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein.
       0.507
AEI49447.1
Beta-lactamase.
  
     0.457
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.