STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46541.1Na+/solute symporter. (493 aa)    
Predicted Functional Partners:
AEI46540.1
ATP-dependent Clp protease adaptor protein ClpS.
 
     0.733
AEI49752.1
SSS sodium solute transporter superfamily.
  
     0.717
AEI48129.1
SSS sodium solute transporter superfamily.
  
     0.681
AEI51089.1
SSS sodium solute transporter superfamily.
  
     0.607
AEI49878.1
Uroporphyrinogen III synthase HEM4.
  
     0.590
AEI51306.1
Hypothetical protein.
 
     0.532
AEI46543.1
TonB-dependent receptor plug.
 
     0.531
AEI46542.1
Hypothetical protein.
       0.520
AEI47113.1
Hypothetical protein.
  
     0.462
AEI51713.1
Protein of unknown function DUF1599.
  
     0.451
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.