STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46555.1SNF2-related protein. (1181 aa)    
Predicted Functional Partners:
AEI48486.1
DNA polymerase I.
  
 0.788
AEI46557.1
Hypothetical protein.
   
 0.762
AEI48098.1
DNA-directed RNA polymerase subunit alpha.
   
 0.729
AEI48244.1
DNA-directed RNA polymerase subunit beta.
    
 0.727
AEI46556.1
Hypothetical protein.
       0.723
AEI46558.1
Hypothetical protein.
       0.723
AEI50587.1
Hypothetical protein.
   
 0.711
AEI47860.1
DNA polymerase III, beta subunit.
   
 0.703
AEI49939.1
Histone deacetylase superfamily.
    
 0.597
AEI48776.1
WD40 repeat-containing protein.
   
 0.562
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.