STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46557.1Hypothetical protein. (666 aa)    
Predicted Functional Partners:
AEI46556.1
Hypothetical protein.
   
   0.811
AEI46558.1
Hypothetical protein.
       0.793
AEI46555.1
SNF2-related protein.
   
 0.762
AEI48676.1
XisI protein.
  
     0.513
AEI48927.1
XisI protein.
  
     0.513
AEI51034.1
DNA topoisomerase I.
  
 
 0.510
AEI46560.1
Type III restriction protein res subunit.
  
  
 0.495
AEI48677.1
XisH protein.
  
     0.489
Runsl_0101
DNA polymerase beta domain protein region.
  
    0.484
AEI47987.1
Hypothetical protein.
 
    0.477
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.