STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46576.1Hypothetical protein. (129 aa)    
Predicted Functional Partners:
AEI46577.1
Viral A-type inclusion protein.
       0.584
AEI46578.1
TonB-dependent receptor.
       0.583
AEI46575.1
Cupin 2 conserved barrel domain protein.
 
     0.571
AEI46574.1
beta-Ig-H3/fasciclin.
       0.489
AEI51696.1
Hypothetical protein.
  
     0.456
AEI47751.1
Membrane-bound dehydrogenase domain protein.
  
     0.431
AEI50490.1
5 nucleotidase deoxy cytosolic type C.
  
     0.431
AEI46675.1
Hypothetical protein.
  
     0.428
AEI47949.1
Phytanoyl-CoA dioxygenase.
  
     0.418
AEI46573.1
Nitrous-oxide metabolic protein NosY.
       0.414
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.