STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46593.1Starch synthase. (269 aa)    
Predicted Functional Partners:
AEI47802.1
1,4-alpha-glucan branching enzyme.
 
 
 0.995
AEI48415.1
1,4-alpha-glucan-branching enzyme.
 
 
 0.995
AEI48726.1
Alpha amylase catalytic region.
  
 
 0.942
Runsl_3241
tRNA-Met.
 
  
 0.940
AEI50687.1
NUDIX hydrolase.
   
 
  0.904
AEI48539.1
Glycogen(starch) synthase.
     
 0.900
AEI48082.1
Isoamylase N-terminal domain-containing protein.
  
  
 0.829
AEI46594.1
Hypothetical protein.
  
    0.821
AEI49930.1
3-dehydroquinate synthase.
   
    0.765
AEI48312.1
Alpha amylase catalytic region.
  
 0.677
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.