STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46610.1GH3 auxin-responsive promoter. (525 aa)    
Predicted Functional Partners:
AEI48749.1
Lysine exporter protein (LYSE/YGGA).
 
   
 0.674
AEI51169.1
Hypothetical protein.
  
     0.654
AEI46611.1
Multifunctional protein surE.
       0.556
AEI46539.1
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
  
     0.538
AEI50587.1
Hypothetical protein.
 
     0.534
AEI46523.1
PUR-alpha/beta/gamma DNA/RNA-binding protein.
  
     0.455
AEI47066.1
Exonuclease RNase T and DNA polymerase III.
  
     0.455
AEI50098.1
Orn/DAP/Arg decarboxylase 2.
  
     0.448
AEI49838.1
Colicin V production protein.
 
     0.445
AEI49878.1
Uroporphyrinogen III synthase HEM4.
  
     0.441
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.