Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46613.1Hypothetical protein. (69 aa)    
Predicted Functional Partners:
AEI46612.1
Heavy metal translocating P-type ATPase.
 
 
 0.944
AEI48066.1
Heavy metal translocating P-type ATPase.
 
 
 0.789
AEI47314.1
Hypothetical protein.
  
 
 0.575
AEI51543.1
Copper-exporting ATPase.
  
 
 0.575
AEI50740.1
Preprotein translocase, SecG subunit.
  
     0.502
AEI47349.1
Transcriptional repressor, CopY family.
 
  
 0.472
AEI51723.1
Transcriptional regulator, AraC family.
 
     0.435
AEI49046.1
Hypothetical protein.
  
     0.409
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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