STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Runsl_0157Glycosyl hydrolase. (447 aa)    
Predicted Functional Partners:
AEI50578.1
Sulfatase.
  
 
 0.933
AEI50556.1
Alpha-galactosidase.
  
  
  0.918
AEI47465.1
Peptidase S10 serine carboxypeptidase.
  
 0.740
AEI48209.1
Hypothetical protein.
  
 0.736
AEI51233.1
Hypothetical protein.
  
 0.736
AEI48687.1
Hypothetical protein.
  
     0.732
AEI46560.1
Type III restriction protein res subunit.
   
    0.721
AEI50198.1
Helicase A859L.
   
    0.721
AEI47902.1
Hypothetical protein.
 
   
 0.703
AEI46615.1
Sulfatase.
 
 
 0.592
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.