STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46627.1Long-chain-fatty-acid--CoA ligase. (570 aa)    
Predicted Functional Partners:
AEI48347.1
Long-chain-fatty-acid--CoA ligase.
 
 
0.920
AEI51788.1
Long-chain-fatty-acid--CoA ligase.
  
 
0.912
AEI46628.1
Butyryl-CoA dehydrogenase.
 
 
 0.832
AEI48110.1
Ribosomal protein L6.
    
  0.623
AEI48179.1
Butyryl-CoA dehydrogenase.
 
 
 0.622
AEI48743.1
Butyryl-CoA dehydrogenase.
 
 
 0.598
AEI48125.1
50S ribosomal protein L3.
   
 
 0.595
Runsl_3923
tRNA-Gln.
    
 0.587
AEI47165.1
Acyl carrier protein.
  
 
 0.582
AEI48413.1
Phosphopantetheine-binding protein.
  
 
 0.582
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.