STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46654.1LmbE family protein. (239 aa)    
Predicted Functional Partners:
AEI46655.1
Peptidase M23.
       0.819
AEI47482.1
UPF0747 protein.
 
   
 0.789
AEI49533.1
Glycosyl transferase group 1.
 
    0.768
AEI46656.1
Thioredoxin reductase.
  
  
 0.763
AEI51668.1
Protein of unknown function DUF1094.
  
   
 0.679
AEI49280.1
Hypothetical protein.
  
   
 0.621
AEI50962.1
Gliding motility-associated protein GldC.
  
     0.586
AEI47971.1
LmbE family protein.
  
     0.563
AEI51455.1
Protein of unknown function DUF2480.
  
     0.529
AEI46485.1
Hypothetical protein.
  
     0.507
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.