STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46655.1Peptidase M23. (375 aa)    
Predicted Functional Partners:
AEI46654.1
LmbE family protein.
       0.819
AEI46656.1
Thioredoxin reductase.
  
    0.755
AEI47254.1
Peptidase M23.
 
   
 0.645
AEI46505.1
Protein of unknown function DUF349.
 
   
 0.625
AEI50696.1
Peptidoglycan glycosyltransferase.
 
   
 0.598
AEI46657.1
OmpA/MotB domain protein.
  
 
 0.588
AEI48023.1
Monofunctional biosynthetic peptidoglycan transglycosylase.
 
  
 0.579
AEI50463.1
Alanine racemase.
 
   
 0.560
AEI51182.1
Peptidoglycan glycosyltransferase.
 
  
 0.558
AEI49539.1
D-alanine--D-alanine ligase.
 
   
 0.541
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.