STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46662.1Blue (type 1) copper domain protein. (361 aa)    
Predicted Functional Partners:
AEI46663.1
Glucose/sorbosone dehydrogenase.
     0.934
AEI50976.1
Membrane-bound dehydrogenase domain protein.
  
     0.672
AEI46472.1
Membrane-bound dehydrogenase domain protein.
 
   
 0.653
AEI47280.1
Membrane-bound dehydrogenase domain protein.
  
     0.614
AEI47750.1
Oxidoreductase domain protein.
  
     0.600
AEI49068.1
Cytochrome c class I.
 
   
 0.509
AEI46661.1
Hypothetical protein.
       0.498
AEI47985.1
Hypothetical protein.
  
     0.487
AEI48175.1
VRR-NUC domain-containing protein.
  
     0.486
AEI47719.1
Hypothetical protein.
  
     0.468
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.