STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI46674.1Protein of unknown function DUF404. (476 aa)    
Predicted Functional Partners:
AEI51342.1
Protein of unknown function DUF403.
  
 0.970
AEI47040.1
Carboxylate-amine ligase ybdK.
      0.907
AEI50697.1
Transglutaminase domain-containing protein.
 
  
 0.819
AEI51340.1
Transglutaminase domain-containing protein.
 
  
 0.814
AEI47799.1
Transglutaminase domain-containing protein.
 
  
 0.805
AEI51341.1
20S proteasome A and B subunits.
 
  
 0.791
AEI50698.1
Protein of unknown function DUF404.
 
  
0.740
AEI50699.1
Protein of unknown function DUF2126.
  
 0.687
AEI46673.1
Regulatory protein TetR.
       0.515
AEI46675.1
Hypothetical protein.
       0.470
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.