STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46686.1ATP-dependent protease hslV. (182 aa)    
Predicted Functional Partners:
AEI49238.1
ATP-dependent hsl protease ATP-binding subunit hslU.
 0.999
AEI49456.1
Protein grpE.
  
  
 0.907
AEI51886.1
Heat shock protein Hsp90.
   
  
 0.899
AEI51167.1
Anti-sigma H sporulation factor, LonB.
   
  
 0.875
AEI51166.1
60 kDa chaperonin.
   
 
 0.851
AEI50850.1
Chaperonin Cpn10.
   
  
 0.807
AEI51165.1
10 kDa chaperonin.
   
  
 0.807
AEI49455.1
Chaperone protein dnaJ.
   
  
 0.746
AEI46687.1
Peptidyl-tRNA hydrolase.
       0.667
AEI47030.1
GMP synthase (glutamine-hydrolyzing).
   
    0.634
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.