STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46687.1Peptidyl-tRNA hydrolase. (186 aa)    
Predicted Functional Partners:
AEI46522.1
GTP-binding protein YchF.
 
  
 0.894
AEI48172.1
Peptide chain release factor 1.
 
  
 0.751
Runsl_0228
GTP-binding protein LepA.
 
  
 0.738
AEI50640.1
tRNA(Ile)-lysidine synthase.
 
  
 0.738
AEI50856.1
Transcription-repair coupling factor.
  
  
 0.726
AEI51100.1
50S ribosomal protein L25.
 
  
 0.712
AEI50302.1
N-acetyl sugar amidotransferase.
  
  
 0.697
AEI47494.1
Ribosome-recycling factor.
  
   
 0.693
AEI46686.1
ATP-dependent protease hslV.
       0.667
AEI47201.1
Primosomal protein N'.
  
    0.654
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.