STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46691.1Beta-carotene 15,15'-monooxygenase, Brp/Blh family. (286 aa)    
Predicted Functional Partners:
AEI46690.1
Lycopene beta and epsilon cyclase.
 
     0.844
AEI46694.1
Rhodopsin.
 
   
 0.815
AEI47225.1
UPF0753 protein.
  
     0.547
AEI51233.1
Hypothetical protein.
  
     0.521
AEI47226.1
NADH dehydrogenase (quinone).
  
     0.514
AEI46584.1
Conserved hypothetical protein CHP03643.
  
     0.485
AEI48275.1
CDP-alcohol phosphatidyltransferase.
  
     0.455
AEI46554.1
TonB-dependent receptor.
  
     0.436
AEI46689.1
Alpha-N-acetylgalactosaminidase.
       0.406
AEI48890.1
Hydrolase CocE/NonD family protein.
  
     0.403
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.