STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46694.1Rhodopsin. (254 aa)    
Predicted Functional Partners:
AEI46691.1
Beta-carotene 15,15'-monooxygenase, Brp/Blh family.
 
   
 0.815
AEI47225.1
UPF0753 protein.
  
     0.575
AEI46690.1
Lycopene beta and epsilon cyclase.
 
   
 0.570
AEI46584.1
Conserved hypothetical protein CHP03643.
  
     0.554
AEI50387.1
Lycopene beta and epsilon cyclase.
 
   
 0.538
AEI47226.1
NADH dehydrogenase (quinone).
  
     0.522
AEI48275.1
CDP-alcohol phosphatidyltransferase.
  
     0.502
AEI46695.1
ATPase.
       0.460
AEI46696.1
Hypothetical protein.
       0.460
AEI50052.1
Hypothetical protein.
  
     0.447
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.