STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46698.1Peptidase S9 prolyl oligopeptidase. (995 aa)    
Predicted Functional Partners:
AEI46816.1
Peptidase M14 carboxypeptidase A.
  
     0.742
AEI47150.1
Peptidase M14 carboxypeptidase A.
  
     0.723
AEI47501.1
Peptidase S41.
  
     0.691
AEI49509.1
Peptidase S41.
  
     0.631
AEI48825.1
Peptidase S9 prolyl oligopeptidase active site domain protein.
  
     0.600
AEI49514.1
Peptidase M14 carboxypeptidase A.
  
     0.599
AEI46822.1
Peptidase S41.
  
     0.572
AEI49513.1
Peptidase M14 carboxypeptidase A.
  
     0.561
AEI46821.1
Peptidase M14 carboxypeptidase A.
  
     0.524
AEI46697.1
SsrA-binding protein.
       0.476
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.