STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46722.1Putative transcriptional regulator, Crp/Fnr family. (1037 aa)    
Predicted Functional Partners:
AEI46708.1
Adenylate/guanylate cyclase.
 
 
 0.742
AEI46724.1
ATP-binding region ATPase domain protein.
 
 
 
 0.732
AEI46723.1
Integral membrane sensor signal transduction histidine kinase.
 
 
 
 0.731
AEI46726.1
Integral membrane sensor signal transduction histidine kinase.
 
 
 
 0.698
AEI46725.1
Integral membrane sensor signal transduction histidine kinase.
 
 
 
 0.675
AEI47852.1
Hypothetical protein.
  
     0.587
Runsl_3100
Integral membrane sensor signal transduction histidine kinase.
  
 
 
 0.559
AEI51397.1
Multi-sensor hybrid histidine kinase.
 
 
 
 0.554
AEI51555.1
Hypothetical protein.
  
     0.535
AEI46857.1
Multi-sensor signal transduction histidine kinase.
  
 
 
 0.521
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.