STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46735.1Protein of unknown function UPF0001. (245 aa)    
Predicted Functional Partners:
AEI51537.1
Multi-copper polyphenol oxidoreductase, laccase.
 
  
 0.867
AEI48793.1
DivIVA domain protein.
  
  
 0.817
AEI47837.1
Septum formation protein Maf.
    0.784
AEI47359.1
Pyrroline-5-carboxylate reductase.
  
 0.737
AEI50463.1
Alanine racemase.
  
  
 0.682
AEI48273.1
Ribosomal RNA large subunit methyltransferase N.
 
     0.676
AEI48117.1
Ribosomal protein L29.
   
    0.659
AEI48114.1
Ribosomal protein L24.
   
    0.648
AEI48102.1
50S ribosomal protein L36.
  
    0.621
AEI48024.1
Oxygen-independent coproporphyrinogen III oxidase.
 
     0.591
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.