STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46784.1N-6 DNA methylase. (268 aa)    
Predicted Functional Partners:
AEI46788.1
Hypothetical protein.
 
     0.853
AEI46807.1
Hypothetical protein.
  
     0.757
AEI48980.1
Restriction endonuclease.
 
   
 0.713
AEI47692.1
Hypothetical protein.
  
    0.703
AEI47579.1
Hypothetical protein.
  
     0.700
AEI47693.1
TonB-dependent receptor plug.
  
     0.677
AEI49377.1
Conserved repeat domain protein.
  
     0.663
AEI49537.1
Protein of unknown function DUF820.
  
     0.610
AEI49708.1
Type I restriction-modification system, S subunit.
  
 
 0.607
AEI49711.1
Restriction modification system DNA specificity domain protein.
  
 
 0.607
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.