STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46807.1Hypothetical protein. (1274 aa)    
Predicted Functional Partners:
AEI51519.1
GPW/gp25 family protein.
  
  
 0.863
AEI46808.1
Hypothetical protein.
       0.778
AEI46784.1
N-6 DNA methylase.
  
     0.757
AEI46788.1
Hypothetical protein.
  
     0.751
AEI46846.1
Hypothetical protein.
 
     0.751
AEI48980.1
Restriction endonuclease.
  
     0.738
AEI46845.1
Hypothetical protein.
  
     0.712
AEI47388.1
Hypothetical protein.
  
  
 0.696
AEI49599.1
Von Willebrand factor type D protein.
  
     0.685
Runsl_0791
Polynucleotide 5'-hydroxyl-kinase.
  
     0.674
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.