STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46821.1Peptidase M14 carboxypeptidase A. (928 aa)    
Predicted Functional Partners:
AEI51576.1
Glycoside hydrolase family 43.
  
     0.664
AEI51177.1
Hypothetical protein.
  
     0.651
AEI47150.1
Peptidase M14 carboxypeptidase A.
  
     0.644
AEI49591.1
Hypothetical protein.
  
     0.574
AEI48825.1
Peptidase S9 prolyl oligopeptidase active site domain protein.
 
     0.570
AEI46851.1
Peptidase M20.
 
     0.569
AEI48209.1
Hypothetical protein.
  
     0.562
AEI51014.1
Polysaccharide biosynthesis protein.
  
     0.554
AEI46822.1
Peptidase S41.
 
     0.540
AEI46698.1
Peptidase S9 prolyl oligopeptidase.
  
     0.524
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.