STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46837.14-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase. (667 aa)    
Predicted Functional Partners:
AEI48619.1
Hydroxymethylbutenyl pyrophosphate reductase.
 
  
 0.982
AEI50818.1
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
 
  
 0.982
AEI51717.1
1-deoxy-D-xylulose 5-phosphate reductoisomerase.
 
  
 0.845
AEI46531.1
4-diphosphocytidyl-2-C-methyl-D- erythritolkinase.
 
  
 0.836
AEI48018.1
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
 
   
 0.831
AEI47262.1
1-deoxy-D-xylulose-5-phosphate synthase.
 
   
 0.821
AEI46836.1
Hypothetical protein.
       0.819
AEI50067.1
Histidyl-tRNA synthetase.
  
  
 0.736
AEI46835.1
Hypothetical protein.
       0.730
AEI46838.1
Chorismate binding domain-containing protein.
     
 0.615
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.