STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46842.1TIM-barrel protein, nifR3 family. (329 aa)    
Predicted Functional Partners:
AEI48486.1
DNA polymerase I.
 
 
 
 0.608
AEI46843.1
Hypothetical protein.
       0.601
AEI51119.1
tRNA pseudouridine synthase A.
 
 
 0.561
AEI46841.1
S-adenosylmethionine synthase.
     
 0.494
AEI49957.1
Alcohol dehydrogenase GroES domain protein.
    
   0.489
AEI51125.1
tRNA pseudouridine synthase B.
 
  
 0.489
AEI49213.1
Aspartate-semialdehyde dehydrogenase.
 
    0.486
AEI47201.1
Primosomal protein N'.
 
     0.481
AEI47398.1
Fmu (Sun) domain protein.
  
 
 0.472
AEI51250.1
RNA methyltransferase, TrmA family.
 
  
 0.469
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.