STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI46851.1Peptidase M20. (441 aa)    
Predicted Functional Partners:
AEI46595.1
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing).
   
 0.675
AEI51063.1
Hypothetical protein.
   
 0.675
AEI50284.1
Peptidase dimerization domain protein.
 
   
 0.670
AEI47969.1
Phosphogluconate dehydrogenase, NAD-binding protein.
  
    0.597
AEI46821.1
Peptidase M14 carboxypeptidase A.
 
     0.569
AEI46731.1
Amidohydrolase.
 
   
 0.556
Runsl_0400
Dipeptidylaminopeptidase/acylaminoacyl-peptidase -like protein.
       0.532
AEI46852.1
Protein of unknown function DUF1028.
       0.491
AEI46816.1
Peptidase M14 carboxypeptidase A.
 
     0.476
AEI46667.1
Beta-lactamase.
 
    0.475
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.