STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI46853.1Tetratricopeptide TPR_2 repeat-containing protein. (963 aa)    
Predicted Functional Partners:
AEI47448.1
Tetratricopeptide TPR_1 repeat-containing protein.
 
0.873
AEI46822.1
Peptidase S41.
 
 
 0.823
AEI48501.1
Tetratricopeptide TPR_1 repeat-containing protein.
 
 0.817
AEI49234.1
Peptidase S41.
 
 
 0.799
AEI51255.1
CHRD domain containing protein.
    
  0.799
AEI46657.1
OmpA/MotB domain protein.
   
 0.783
AEI47501.1
Peptidase S41.
  
 
 0.782
AEI49509.1
Peptidase S41.
  
 
 0.782
AEI46854.1
Hypothetical protein.
       0.773
AEI46855.1
Peptidase C1A papain.
   
   0.768
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.