STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46859.1FAD dependent oxidoreductase. (573 aa)    
Predicted Functional Partners:
AEI47234.1
Hypothetical protein.
 
 
 0.789
AEI49888.1
Twin-arginine translocation pathway signal.
 
 
 0.787
AEI51130.1
Hypothetical protein.
 
 
 0.787
AEI46865.1
Hypothetical protein.
 
 
 0.781
AEI46961.1
Hypothetical protein.
 
 
 0.774
AEI46860.1
NAD-dependent epimerase/dehydratase.
       0.527
AEI48829.1
Protein of unknown function DUF1080.
 
     0.413
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.