STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46867.1Glycosyl hydrolase family 88. (388 aa)    
Predicted Functional Partners:
AEI48653.1
Uncharacterized conserved protein UCP014753.
     0.857
AEI51084.1
Glycosyl hydrolase family 88.
  
     0.717
AEI48697.1
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
 
  
 0.606
AEI46868.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.574
AEI48657.1
4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase.
 
   
 0.536
AEI48706.1
4-deoxy-L-threo-5-hexosulose-uronateketol- isomerase.
 
   
 0.529
AEI46870.1
TonB-dependent receptor plug.
 
     0.523
AEI46871.1
RagB/SusD domain-containing protein.
 
     0.506
AEI49062.1
TonB-dependent receptor plug.
  
     0.447
AEI49183.1
Chondroitin AC lyase.
   
 0.439
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.