STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46873.1Protein of unknown function DUF1080. (299 aa)    
Predicted Functional Partners:
AEI50830.1
Protein of unknown function DUF1080.
 
     0.795
AEI46874.1
Coagulation factor 5/8 type domain protein.
       0.773
AEI46875.1
Catalytic domain-containing protein of components of various dehydrogenase complexes.
       0.773
AEI51779.1
Major facilitator superfamily MFS_1.
  
     0.578
AEI47439.1
Xylose isomerase domain-containing protein TIM barrel.
  
     0.564
AEI47267.1
Xylose isomerase domain-containing protein TIM barrel.
  
     0.553
AEI50641.1
Xylose isomerase domain-containing protein TIM barrel.
  
     0.540
AEI48848.1
PKD domain containing protein.
 
     0.535
AEI50227.1
Oxidoreductase domain protein.
  
     0.535
AEI49120.1
Oxidoreductase domain protein.
  
     0.529
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.