Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEI46886.1Ferredoxin--NAD(+) reductase. (388 aa)    
Predicted Functional Partners:
AEI46887.1
Ferredoxin.
 
 
 0.993
AEI48841.1
Nitrite reductase (NAD(P)H), small subunit.
 
 0.866
AEI47145.1
Rieske (2Fe-2S) iron-sulfur domain protein.
  
 
 0.781
AEI46894.1
Linalool 8-monooxygenase.
 
   
 0.749
AEI49528.1
ATP-dependent metalloprotease FtsH.
   
 
 0.695
AEI48108.1
Ribosomal protein S5.
   
   0.670
AEI50403.1
DNA/RNA non-specific endonuclease.
    
 
 0.642
AEI51199.1
DNA/RNA non-specific endonuclease.
    
 
 0.642
AEI48946.1
FAD dependent oxidoreductase.
  
 
 0.637
AEI50034.1
Rhodanese-like protein.
 
 0.604
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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