STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI46897.1alpha-L-rhamnosidase. (1206 aa)    
Predicted Functional Partners:
AEI46480.1
Glycoside hydrolase family 2 sugar binding protein.
 
 
 0.658
AEI47602.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
 0.627
AEI46931.1
Xylan 1,4-beta-xylosidase.
     0.600
AEI49341.1
Protein of unknown function DUF1680.
 
    0.530
AEI47833.1
Oxidoreductase domain protein.
  
    0.527
AEI49030.1
Glycoside hydrolase family 2 sugar binding protein.
 
     0.525
AEI47832.1
L-rhamnose mutarotase.
 
    0.523
AEI46911.1
alpha-L-rhamnosidase.
 
     0.511
AEI51347.1
Protein of unknown function DUF1680.
 
    0.510
AEI49025.1
Glycoside hydrolase family 29 (alpha-L-fucosidase).
  
     0.500
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.