STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Runsl_04513',5'-cyclic-AMP phosphodiesterase. (290 aa)    
Predicted Functional Partners:
AEI49535.1
5'-nucleotidase.
  
 
 0.921
AEI49192.1
Metallophosphoesterase.
 
  
 
0.916
AEI46611.1
Multifunctional protein surE.
     
  0.900
AEI47447.1
AMP nucleosidase.
     
  0.900
AEI48620.1
Metallophosphoesterase.
    
  0.900
AEI48624.1
Adenylate kinase.
     
 0.900
AEI50201.1
5'-nucleotidase.
    
  0.900
AEI50490.1
5 nucleotidase deoxy cytosolic type C.
     
  0.900
AEI51784.1
Adenylosuccinate lyase.
     
 0.900
AEI46899.1
Isoquinoline 1-oxidoreductase.
       0.618
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.