STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46899.1Isoquinoline 1-oxidoreductase. (711 aa)    
Predicted Functional Partners:
AEI46900.1
Isoquinoline 1-oxidoreductase.
 
 0.950
AEI47573.1
Isoquinoline 1-oxidoreductase.
 
 0.887
AEI49549.1
Isoquinoline 1-oxidoreductase.
 
 0.880
AEI48181.1
Isoquinoline 1-oxidoreductase.
 
 0.870
AEI47240.1
Isoquinoline 1-oxidoreductase.
 
 0.854
AEI49800.1
Xanthine dehydrogenase.
  
 
 0.766
Runsl_0451
3',5'-cyclic-AMP phosphodiesterase.
       0.618
AEI47453.1
XshC-Cox1-family protein.
 
  
 0.522
AEI49799.1
Carbon-monoxide dehydrogenase (acceptor).
  
 
 0.466
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.