STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46911.1alpha-L-rhamnosidase. (797 aa)    
Predicted Functional Partners:
AEI46931.1
Xylan 1,4-beta-xylosidase.
     
 0.902
Runsl_3241
tRNA-Met.
  
 
 0.766
AEI46908.1
Coagulation factor 5/8 type domain protein.
 
     0.661
AEI47802.1
1,4-alpha-glucan branching enzyme.
  
 
 0.594
AEI48082.1
Isoamylase N-terminal domain-containing protein.
  
 
 0.594
AEI48415.1
1,4-alpha-glucan-branching enzyme.
  
 
 0.594
AEI48972.1
alpha-L-rhamnosidase.
 
     0.588
AEI51654.1
Oxidoreductase domain protein.
  
     0.582
AEI46912.1
Hypothetical protein.
       0.532
AEI46897.1
alpha-L-rhamnosidase.
 
     0.517
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.