STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI46918.1Cyclase family protein. (253 aa)    
Predicted Functional Partners:
AEI48428.1
Kynureninase.
  
  
 0.898
Runsl_0476
Fumarylacetoacetate (FAA) hydrolase.
     0.728
AEI46925.1
Hypothetical protein.
 
     0.692
AEI46923.1
Monooxygenase FAD-binding protein.
 
     0.677
AEI46926.1
Biphenyl-2,3-diol 1,2-dioxygenase.
 
     0.650
AEI46919.1
Protein of unknown function DUF820.
       0.561
AEI46963.1
FAD dependent oxidoreductase.
 
     0.483
AEI47973.1
Biphenyl-2,3-diol 1,2-dioxygenase.
 
     0.467
AEI46915.1
Major facilitator superfamily MFS_1.
 
     0.442
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.